Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "molecular_function", which is defined as "The actions of a single gene product or complex at the molecular level consisting of a single biochemical activity or multiple causally linked biochemical activities. A given gene product may exhibit one or more molecular functions." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "identical protein binding", which is defined as "Interacting selectively and non-covalently with an identical protein or proteins." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cell adhesion", which is defined as "The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "homophilic cell adhesion via plasma membrane adhesion molecules", which is defined as "The attachment of a plasma membrane adhesion molecule in one cell to an identical molecule in an adjacent cell." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cell-cell adhesion", which is defined as "The attachment of one cell to another cell via adhesion molecules." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "biological_process", which is defined as "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "protein binding", which is defined as "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cell-cell adhesion via plasma-membrane adhesion molecules", which is defined as "The attachment of one cell to another cell via adhesion molecules that are at least partially embedded in the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "biological adhesion", which is defined as "The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "binding", which is defined as "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
878 differentially expressed genes in the male Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S3. Values presented are DIOPT Scores. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
425 differentially expressed genes in the female Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S3. Values presented are DIOPT Scores. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
530 differentially expressed genes in Cluster 0 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
538 differentially expressed genes in Cluster 1 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
545 differentially expressed genes in Cluster 2 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
452 differentially expressed genes in Cluster 3 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
435 differentially expressed genes in Cluster 4 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
530 differentially expressed genes in Cluster 5 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
498 differentially expressed genes in Cluster 6 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
510 differentially expressed genes in Cluster 7 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
451 differentially expressed genes in Cluster 8 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
519 differentially expressed genes in Cluster 9 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
543 differentially expressed genes in Cluster 10 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
450 differentially expressed genes in Cluster 11 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
536 differentially expressed genes in Cluster 12 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
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